DisGeNET - a database of gene-disease associations

List of associated variants

Stomach Carcinoma, C0699791

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs779315943	DNMT3A	0.882	0.160	2	25247708	frameshift variant	TTTCC/-	del			5
rs1057519848	EGFR	0.570	0.560	7	55191822	missense variant	TG/GT	mnv			72
rs397507444	MTHFR	0.405	0.880	1	11794407	missense variant	T/G	snv			306
rs1800872	IL19 ; IL10	0.495	0.840	1	206773062	5 prime UTR variant	T/G	snv		0.69	119
rs2279744	MDM2	0.605	0.640	12	68808800	intron variant	T/G	snv		0.31	48
rs5361	SELE ; C1orf112	0.623	0.720	1	169731919	missense variant	T/G	snv	8.3E-02; 8.0E-06	7.8E-02	47
rs11556218	IL16	0.653	0.600	15	81305928	missense variant	T/G	snv	9.6E-02	0.12	27
rs238406	ERCC2	0.677	0.480	19	45365051	synonymous variant	T/G	snv	0.58	0.65	23
rs10511729	LOC101929563	0.742	0.240	9	23557229	intron variant	T/G	snv		0.35	11
rs2240688	FGFBP2 ; PROM1	0.790	0.160	4	15968726	3 prime UTR variant	T/G	snv		0.22	7
rs1924966		0.807	0.080	13	72432915	intergenic variant	T/G	snv		0.33	6
rs353639	CD44 ; SNORD164	0.851	0.120	11	35162817	intron variant	T/G	snv		0.32	5
rs207454	XDH	0.851	0.120	2	31344766	intron variant	T/G	snv	0.11	0.16	4
rs2675	ITGB5	0.882	0.120	3	124763266	3 prime UTR variant	T/G	snv		0.17	4
rs1135354	IL18R1	0.925	0.080	2	102397842	3 prime UTR variant	T/G	snv		0.23	3
rs10787498	CASP7	0.925	0.080	10	113729891	3 prime UTR variant	T/G	snv		0.38	2
rs384490	CARS1	0.925	0.080	11	3057655	splice region variant	T/G	snv		0.46	2
rs579501	LOC283028	0.925	0.080	10	42751347	non coding transcript exon variant	T/G	snv		5.9E-02	2
rs10509671	PLCE1	1.000	0.080	10	94309297	intron variant	T/G	snv		0.24	1
rs1229984	ADH1B	0.570	0.560	4	99318162	missense variant	T/C;G	snv	0.90		83
rs1760944	OSGEP ; APEX1	0.672	0.480	14	20454990	non coding transcript exon variant	T/C;G	snv			26
rs376040996	XPA	0.790	0.120	9	97687210	missense variant	T/C;G	snv	1.2E-05; 2.0E-05		7
rs9297976	JRK ; PSCA	0.790	0.160	8	142670817	intron variant	T/C;G	snv			7
rs6087990	DNMT3B	0.925	0.080	20	32762102	upstream gene variant	T/C;G	snv			4
rs17109928	NOC3L	0.882	0.080	10	94338336	intron variant	T/C;G	snv		0.15	3